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Bring up the Windows console and type the following with the substitutions as follows:
<user> - replace with username that you are accessing mysql with
<password> - replace with the password for the user
"C:\backups\wikidb.sql" - replace this with where you want the dump to be put. You must create a backup directory first to save this to.
"C:\Program Files\MySQL\MySQL Server 5.0\bin\mysqldump" -R -u<user> -p<password> --result-file="C:\backups\wikidb.sql" wikidb
Copy the following folder to the backup directory:
C:\Program Files\MindTouch\MindTouch\data\files
Once you have backed up your install then download the newest MSI.
Run the installer and your MindTouch will be upgraded to the new version.